cellpose
a generalist algorithm for cellular segmentation

carsen stringer & marius pachitariu
Check out full documentation here. For software advice, check out our topic on image.sc
Check out a revamping of cellpose for elongated and irregular shapes, omnipose!
Try cellpose by uploading one PNG or JPG <10 MB. Images are resized to a max size of 512x512 pixels.
or click on an example image from our test set:
What to segment
Channel to segment
Nuclear channel (if cyto)
Avg cell diameter (pixels)
Invert image
Keep output size