cellpose
a generalist algorithm for cellular segmentation

carsen stringer & marius pachitariu
Check out full documentation here. For software advice, check out our topic on image.sc. Download the Cellpose dataset here.

✨ NEW RELEASE: Cellpose 2.0 ✨
train a model on your own data in less than an hour: twitter, biorxiv!



Try Cellpose 1.0 by uploading one PNG or JPG <10 MB. Images are resized to a max size of 512x512 pixels.
or click on an example image from our test set:
What to segment
Channel to segment
Nuclear channel (if cyto)
Avg cell diameter (pixels)
Invert image
Keep output size